XSim.jl

Documentation for XSim.jl

New Users

New users are strongly encouraged to read the page Demo: Step by Step first.

Features

  • Efficient CPOS algorithm
  • Founders characterized by real genome sequence data
  • Complicated pedigree structures among descendants
  • Strong extensibilty
  • Modularism design
  • Straightforward interface

Installation

julia> using Pkg
julia> Pkg.add("XSim")

or the beta version

julia> Pkg.add(PackageSpec(name="XSim", rev="master"))

Outline

Home
Demo
Core Functions
Case Studies
Library

Cite XSimV2

@article{cheng_xsim_2015,
	title = {XSim: Simulation of Descendants from Ancestors with Sequence Data},
	volume = {5},
	issn = {2160-1836},
	shorttitle = {XSim},
	url = {http://g3journal.org/lookup/doi/10.1534/g3.115.016683},
	doi = {10.1534/g3.115.016683},
	language = {en},
	number = {7},
	journal = {G3\&\#58; Genes{\textbar}Genomes{\textbar}Genetics},
	author = {Cheng, Hao and Garrick, Dorian and Fernando, Rohan},
	month = jul,
	year = {2015},
	Pages = {1415--1417},
}